Browsing by Author "Kherawat, Bhagwat Singh"

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    Genome-wide analysis of the pleiotropic drug resistance (PDR) gene family and putative PDR specific miRNAs: deciphering their functions in development processes and varied stresses in Triticum aestivum L.
    (Springer Nature, 2026-01-13) Kesawat, Mahipal Singh; Kherawat, Bhagwat Singh; Reager, Madan Lal; Lenka, Sangram K.; Chung, Sang-Min; Masika, Fred Bwayo
    Background The pleiotropic drug resistance (PDR) transporter stands out as one of the largest subfamilies within ABC transporters. These transporters play crucial roles in a multitude of biological processes, including detoxification, phytohormone transportation, stomatal movement, the translocation of various secondary metabolites, tolerance to heavy metal and adaptation to the diverse stress conditions. However, the structural and functional characterization of PDR gene family members in wheat has yet to be fully elucidated. Results In this investigation, we identified 66 TaPDR genes in the genome of wheat. The subsequent phylogenetic tree revealed that the genes clustered into four subfamilies. Chromosomal mapping unveiled the dispersal of 66 TaPDR genes across 17 wheat chromosomes. The twenty-two pairs of duplicated gene were identified in the PDR family. Ka/Ks ratio revealed that 22 duplicated TaPDR genes went through purifying selection. It was noted that the TaPDR genes displayed significant diversity in their gene structures. In addition, the presence of numerous cis-regulatory elements in the promoter regions of the TaPDR genes were identified. Differential expression patterns were observed among TaPDR family members across various tissues and in response to multiple stress conditions. Moreover, this investigation explored the miRNAs targeting TaPDR genes and their expression profiles in various tissues. Conclusion Thus, the results of this study establish a strong basis for further investigation of the functions of TaPDR genes across different tissues, developmental stages, phytohormone responses, and diverse stress in wheat.
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    Genome-wide identification and expression analysis of the Small Ubiquitin-like Modifier (SUMO) gene family in Triticum aestivum L.
    (Springer Nature, 2025-12-11) Kesawa, Mahipal Singh; Kherawat, Bhagwat Singh; Reager, Madan Lal; Badu, Meenakshi; Kabi, Mandakini; Mohanty, Ankita; Raju, Kalidindi Krishnam; Lenka, Sangram K.; Alamery, Salman Freeh; Al-ateeq, Talak K.; Masika, Fred Bwayo; Hong, Choo Bong
    Background: Post-translational modification of proteins by SUMO is critical for a wide range of cellular and developmental processes. Although SUMO proteins have been extensively studied in animals and, to some extent, in Arabidopsis, their precise functions in other crop plants are still largely unknown. Results: In this research, we identified 31 TaSUMO genes in genome of wheat. Phylogenetic tree unveiled that genes clustered into thirteen subfamilies. Chromosomal mapping unveiled the dispersal of 31 TaSUMO genes across 11 wheat chromosomes. The eleven pairs of duplicated gene were identified in the SUMO family. Ka/Ks ratio revealed that 8 duplicated TaSUMO genes went through purifying purification. Furthermore, it was noted that TaSUMO genes displayed significant conversation in their gene structure. In addition, analysis of promoters uncovered the presence of numerous cis-regulatory elements in the promoter region of the TaSUMO genes. The differential expression patterns were observed among TaSUMO family members across various tissues and in response to multifaceted stress conditions. Moreover, this investigation explored the miRNAs targeted to TaSUMO genes and expression profile in various tissues. Conclusion: Thus, the results of this study establish a strong basis for further investigation of the functions of TaSUMO genes across different tissues, developmental stages, phytohormone responses, and diverse stress in wheat.
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    Genome-wide survey of peptides containing tyrosine sulfation (PSY) gene family and potential PSY specific miRNA revealed their role in plant development and diverse stress conditions in rice (Oryza sativa L.).
    (Springer Nature, 2025-08-26) Kesawat, Mahipal Singh; Manohar, Swati; Anand, Ankit; Alamery, Salman Freeh; Badu, Meenakshi; Kabi, Mandakini; Mohanty, Ankita; Naik, Islavath Suresh; Kumar, Santosh; Kherawat, Bhagwat Singh; Kumar, Vinay; Lenka, Sangram K.; Verma, Shreya; Shrivastava, Harsha; Kumawat, Giriraj; Masika, Fred Bwayo
    Background Soybean is a fundamental oilseed crop, recognized for its notable protein and oil levels. Tyrosine Sulfation (PSY) genes play an essential role in plant growth, development, and responses to stress. However, the precise functions and mechanisms regulated by PSY are still being explored. Currently, there is insufficient information on the PSY gene family in soybean. Therefore, this study conducted a comprehensive genome-wide survey to detect and PSY family members were categorized in soybean. Results The phylogenetic analysis revealed that PSY family was categorized into nine distinct groups. Further, we precisely mapped the locations of the 12 GmPSY genes across seven soybean chromosomes. Examination of gene duplication revealed six pairs of duplicated genes within the PSY gene family in soybean. A consistent gene structure pattern was observed among GmPSY gene family members. The alignment of GmPSY protein amino acid sequences revealed a conserved PSY domain present in all proteins. Furthermore, RNA-seq data from the Soybean Expression Atlas revealed varying expression patterns of GmPSY genes across different tissues. To validate the expression profiles, qRT-PCR analysis was performed on selected GmPSY genes using root tissues from contrasting soybean accessions. In addition, identified eight out of the 12 GmPSY genes as targets for ten specific miRNAs. Moreover, we constructed a protein-protein interaction network to explore the connections between GmPSY and other soybean proteins. Conclusion Thus, these discoveries lay a robust groundwork for future research aimed at elucidating the specific roles of GmPSY members across different tissues and under various stress conditions in soybean.
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    Nanoparticles in plant system: A comprehensive review on their role in diverse stress management and phytohormone signaling
    (Elsevier, 2025-08-19) Kumar, Vinay; Naik, Islavath Suresh; Das, Bimal; Singh, Anupama; Nayak, Prayasi; Mohapatra, Chinmayee; Debnath, Debanjana; Tripathy, Maitreyee; Behera, Kumareswar; Masika, Fred Bwayo; Manohar, Swati; Chung, Sang-Min; Kherawat, Bhagwat Singh; Hemalatha, Mamidi; Kesawat, Mahipal Singh
    Climate variability has led to significant environmental shifts in recent years, placing growing strain on agricultural systems worldwide. These environmental fluctuations have magnified the effects of abiotic and biotic stresses on plants, substantially hampering their growth and lowering crop productivity. To tackle these challenges, there is an urgent need for innovative and effective strategies that promote sustainable agricultural practices. Among emerging technologies, nanotechnology has attracted significant interest for its transformative potential in agriculture. The application of nanoscale materials including nanopesticides, nanofungicides, nanofertilizers, and nanoherbicides offers promising avenues for enhancing crop protection and boost productivity. Nanoparticles (NPs) exhibit unique physicochemical properties that allow for precise and targeted delivery of nutrients and protective agents, thereby improving both the quality and yield of crops under diverse stress conditions. Phytohormone signaling pathways comprise intricate biochemical networks that enable plant hormones to regulate growth, development, and stress responses by transmitting and amplifying precise molecular signals. Recent studies suggest that NPs can alleviate stress-induced damage in plants by modulating phytohormone signaling pathways. However, the complex mechanisms underlying the interactions between NPs and phytohormone biosynthesis remain largely unexplored. This review offers a comprehensive overview of nanoparticle synthesis methods, types, and characterization techniques, with particular emphasis on their potential for mitigating both abiotic and biotic stresses. In addition, the article explores the role of NPs in plant pathology, particularly in disease detection and management. It also highlights emerging evidence on the impact of NPs on phytohormone signaling pathways, which are crucial for improving plant resilience and productivity in stress-prone environments. Thus, nanotechnology holds considerable promise for alleviating stress-related challenges and improving crop yields. A deeper understanding of NP–phytohormone interactions is crucial for developing safe and effective nanotechnological strategies to advance sustainable agriculture
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    Unexplored potential of carrot (Daucus carota L.) bioactive in combating cancer: an insight into intricate mechanisms
    (Taylor & Francis, 2026-01-27) Kumar, Santosh; Kesawat, Mahipal Singh; Kherawat, Bhagwat Singh; Singh, Archana; Kumar, Anmol; Kumari, Sweta; Alamery, Salman Freeh; Singh, Pratibha; Masika, Fred Bwayo; Manohar, Swati
    The rising incidence of cancer, combined with costs, toxicity, and side effects of conventional treatments such as immunotherapy, chemotherapy, radiotherapy, and surgery, underscores the need for preventive strategies. Natural phyto-bioactives, have attracted increasing scientific interest due to their diverse biological activities. These phytochemicals in carrots have been studied for their roles in modulating intracellular signalling pathways in vitro and preclinical studies. Carrots contain an abundant spectrum of bioactive compounds, including phenolics, carotenoids, polyacetylenes, ascorbic acid, and dietary fiber. These constituents have been reported to modulate processes such as apoptosis, oxidative stress, inflammation, angiogenesis, and pathways involved in cell proliferation in experimental systems. This comprehensive review studies findings from preclinical studies, epidemiological research, and meta-analyses to evaluate the biological activities of carrot bioactives in cancer-relevant biological mechanisms. By examining their ability to modulate molecular pathways involved in tumour invasion and metastasis, this review highlights the potential mechanistic relevance of carrot-derived phytoactive compounds against metastatic cells. Although preclinical studies suggest that these bioactives may influence processes associated with tumour progression, the available evidence is largely derived from in vitro and animal models, and therefore requires validation through translational research and well-designed, large-scale clinical trials. Rather than establishing definitive cancer-preventive or therapeutic effects, current scientific findings support the role of carrot-derived bioactives as promising candidates for further investigation. Advancing research into the underlying molecular mechanisms of carrots may help identify specific phytochemicals that modulate pathways related to tumour invasion and metastasis, therby enabling the development of future cancer prevention strategies.